Re: [R-sig-phylo] TreeTools limit on number of tips

2024-01-02 Thread Martin R. Smith
e's distance from the median of a representative subset? - Martin -- *Dr. Martin R. Smith* Associate Professor & Director of Education Department of Earth Sciences Durham University Mountjoy Site, South Road, Durham, DH1 3LE United Kingdom *T:* +44 (0)191 334 2320 (Tues / Thurs) *M*: +44 (0)

[R-sig-phylo] Parallelization in ape::dist.topo

2023-03-07 Thread Martin R. Smith
noted there, the RF distance has certain issues which means that it is not always the most suitable measure of tree dissimilarity!) And you can find ape's GitHub repo https://github.com/emmanuelparadis/ape Martin -- *Dr. Martin R. Smith* Associate Professor & Director of Education Depa

[R-sig-phylo] Enumerating tree topologies

2020-07-01 Thread Martin R. Smith
elled trees: https://ms609.github.io/TreeTools/reference/TreeShape.html I'd be interested to hear if you come across an effective way to enumerate unrooted tree shapes, which is a less straightforward affair... Best, Martin -- *Dr. Martin R. Smith* Assistant Professor in Palaeontology Durha