).
Best,
Brian
_
Brian O’Meara
He/Him
Professor, Dept. of Ecology & Evolutionary Biology
University of Tennessee, Knoxville
From: Rafael S Marcondes
Date: Friday, February 2, 2024 at 1:45 PM
To: O'Meara, Brian C
Cc: r-sig-phylo
Subject: Re: [R-sig-phylo
Isn’t that what houwie does (which is fairly recently published)?
https://doi.org/10.1093/evolut/qpad002
Note my conflict of interest as a coauthor.
Best,
Brian
_
Brian O’Meara
He/Him
Professor, Dept. of Ecology & Evolutionary Biology
University of
In addition to the ideas so far, there is also corHMM.
https://rdrr.io/cran/corHMM/man/corHMM.html is the main help for this, but you
can also use corHMM::ancRECON, corHMM:rayDISC, and corHMM:corDISC.
corHMM::plotRECON can plot ancestral state reconstructions.
For tip uncertainty, you can do
Dear Sim�n,
Typically people do this by �painting� regimes on the tree using the discrete
trait and then trying different OU models for the different regimes. For
example, does being in the island regime lead to a higher rate of evolution
(bigger sigma in the BMS model) than being in the
(log(g)^2)/MY: it�s about the accumulation of variance with time, and variance
has units squared.
And please don�t apologize for the question. You only have it because we as a
field have been sloppy about not including units with our measurements in
papers (I�m guilty of this, too). So it�s
