That’s right Jacob. Tracer will do the same thing if, and unfortunately only
if, you predefine taxon sets in BEAUti. The problems with predefining clades
in BEAUti are that (1) it is kind of a pain, (2) you often don’t know what the
clades will be until after you conduct the analysis (as in my
This is cool — so this looks like it will work on a set of posterior trees even
if they don’t all share the same topology?
Jake
> On Apr 10, 2018, at 3:37 AM, jschenk wrote:
>
> Thank you Graham, Liam, and Emmanuel for your suggestions. Applying the
> .uncompressTipLabel did the trick for my
Thank you Graham, Liam, and Emmanuel for your suggestions. Applying the
.uncompressTipLabel did the trick for my code. If anyone is interested in
using the code to identify the 95% HPD for a single node from a set of
chronograms, you can find the code here
(https://github.com/johnjschenk/Rcod
Hi John,
See my comments below.
Le 09/04/2018 à 16:46, jschenk a écrit :
Hi Folks,
I have been banging my head against what appears to be an easy coding problem
for a while now and haven’t been able to hack my way out of it. I am running a
function to identify a posterior set of node ages f
Dear John.
You could try running .uncompressTipLabel on the "multiPhylo" object.
Let us know if that works.
All the best, Liam
Liam J. Revell, Associate Professor of Biology
University of Massachusetts Boston
& Profesor Asociado, Programa de Biología
Universidad del Rosario
web: http://facult
Hi Folks,
I have been banging my head against what appears to be an easy coding problem
for a while now and haven’t been able to hack my way out of it. I am running a
function to identify a posterior set of node ages for a particular node. The
function I wrote works just fine, but when I use