Thank you all for your replies. I will give these a try.
Best Regards, Max
On Fri, Jan 10, 2020 at 1:59 AM Klaus Schliep
wrote:
>
> Hi Max,
> there is also a function called Siblings in phangorn:
> library(phangorn)
> tree <- rcoal(10)
> Siblings(tree, 1:10, include.self=TRUE) # Siblings for all
Hi Max,
there is also a function called Siblings in phangorn:
library(phangorn)
tree <- rcoal(10)
Siblings(tree, 1:10, include.self=TRUE) # Siblings for all the tips
Siblings(tree, include.self=TRUE) # all pairs
Regards,
Klaus
On Fri, Jan 10, 2020 at 3:27 AM Liam Revell wrote:
> Peter's functio
Peter's function works but it only returns sister pairs in which both of
the sisters are tips.
Here's another alternative that uses phangorn & gives you a list of all
the sister pairs in which at least one of the sisters is a tip (and it
also works for terminal multifurcations).
parents<-uniqu
HI Max,
Not entirely sure if this is what you want but i did come across a script to
extract direct sister pairs (tips) in a tree
>From the dryad supplement of Grossenbacher D, Briscoe Runquist R, Goldberg
>EE, Brandvain Y (2015) Geographic range size is predicted by plant mating
>system. Eco
If I have an object of class "phylo" in the ape, with attributes edge,
Nnode, node.label, and tip.label, is there some straightforward way for me
to extract a list of sister taxon pairs (whether the sister taxa are two
edges or an edge and a node)?
I wrote to E. Paradis (the author of ape), and he
