Re: [R-sig-phylo] Bug in ape: dropping tips from a ladderized tree (still) randomly shuffles the node labels

2015-08-17 Thread David Bapst
Hi Emannuel (and list), Just wanted to let you know that after some testing with my own cases, the new drop.tip appears to fix the error, so the issue is closed from my perspective. Cheers, -Dave On Tue, Jul 28, 2015 at 12:25 PM, Emmanuel Paradis emmanuel.para...@ird.fr wrote: Hi David, I've

Re: [R-sig-phylo] Bug in ape: dropping tips from a ladderized tree (still) randomly shuffles the node labels

2015-07-28 Thread Emmanuel Paradis
Hi David, I've conducted more tests and the bug was really in drop.tip and sometimes apparent without calling ladderize. The fix seems to work well. I have built ape 3.3-0.6 which is available on ape-package.ird.fr as source package. Best, Emmanuel Le 25/07/2015 19:33, Emmanuel Paradis a

[R-sig-phylo] Bug in ape: dropping tips from a ladderized tree (still) randomly shuffles the node labels

2015-07-17 Thread David Bapst
Hello all, Recently I noticed a complex function of mine that does some tree transformations was randomly scrambling node.label elements. In the course of doing so, I found this old email (below) from Rebecca Best in 2012, which outlined an issue that occurred when a ladderized tree had tips