Re: [R-sig-phylo] Collapsing branches with low bootstrap values

2013-08-22 Thread Naxerova, Kamila
So sorry for the silly question, I overlooked your show.node=T. Many thanks. Kamila On Aug 22, 2013, at 12:29 PM, "Naxerova, Kamila" wrote: > Thank you Klaus, this works like a charm. One more if I may: If I still want > to have bootstrap values in my plot, how do I go about plotting those f

Re: [R-sig-phylo] Collapsing branches with low bootstrap values

2013-08-22 Thread Naxerova, Kamila
Thank you Klaus, this works like a charm. One more if I may: If I still want to have bootstrap values in my plot, how do I go about plotting those for my new tree? Kamila On Aug 22, 2013, at 12:12 PM, Klaus Schliep mailto:klaus.schl...@gmail.com>> wrote: Hi Kamila, try function pruneTree in

Re: [R-sig-phylo] Collapsing branches with low bootstrap values

2013-08-22 Thread Klaus Schliep
On Thu, Aug 22, 2013 at 5:09 PM, Naxerova, Kamila wrote: > Dear list, > > is there a function that will take a tree and the output of boot.phylo() > and collapse branches below a chosen bootstrap value cutoff? > > Many thanks. > Kamila > > ___ > R-sig-ph

[R-sig-phylo] Collapsing branches with low bootstrap values

2013-08-22 Thread Naxerova, Kamila
Dear list, is there a function that will take a tree and the output of boot.phylo() and collapse branches below a chosen bootstrap value cutoff? Many thanks. Kamila ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/