Re: [R-sig-phylo] Logarithmic Scales for Plotting Dated Phyogenies (e.g. Log of Time Axis?)

2019-01-08 Thread Emmanuel Paradis
Hi David, Have you tried ape::plotBreakLongEdges? I think that would be the simplest solution to your problem. I'm not clear how a non-linear transformation could be implemented easily (and be meaningful in most situations). Le 02/01/2019 à 21:15, David Bapst a écrit : Hi all, I've been de

Re: [R-sig-phylo] Logarithmic Scales for Plotting Dated Phyogenies (e.g. Log of Time Axis?)

2019-01-02 Thread Bjørn Tore Kopperud
log(x), breaks = exp(seq(0, 4))) + ggtitle("Exponential transform") p3$data$x <- exp(p3$data$x) grid.arrange(p1, p2, p3) ``` From: R-sig-phylo on behalf of David Bapst Sent: 02 January 2019 21:15 To: R Sig Phylo Listserv Su

[R-sig-phylo] Logarithmic Scales for Plotting Dated Phyogenies (e.g. Log of Time Axis?)

2019-01-02 Thread David Bapst
Hi all, I've been dealing with a tree with one very deep divergence and many very shallow divergences recently, and I was curious if there was an R plotting capability that allows for the depth axis of the tree to be non-linear or logarithmic - helpful if there can be a time axis bar as well, as w