Re: [R-sig-phylo] Margin Artifact in plot.phylo with Very Long Tip Labels, despite show.tip.label=FALSE

2015-06-22 Thread Emmanuel Paradis
Hi, David: thanks for the report. Liam: thanks for the fix. I modified it slightly: if (is.character(alp)) { tmp <- max(xx.tips) if (show.tip.label) tmp <- tmp * 1.5 } else { I did the same correction a few lines below in the function for the y-limit with non-horizont

Re: [R-sig-phylo] Margin Artifact in plot.phylo with Very Long Tip Labels, despite show.tip.label=FALSE

2015-06-18 Thread Liam J. Revell
This is a bug & it is apparently here: if (is.character(alp)) tmp <- max(xx.tips) * 1.5 This line tells R to give 50% of the total tree height (or 1/3 of the plotting width) for labels if optimization of the amount of space to leave for labels fails (which makes is.character(alp) evalu

[R-sig-phylo] Margin Artifact in plot.phylo with Very Long Tip Labels, despite show.tip.label=FALSE

2015-06-18 Thread David Bapst
Hi all, I was plotting some trees with obscenely long taxon names (long story) and found an odd plotting artifact that leaves white-space when show.tip.labels=FALSE, as if the plot was trying make room for the extraordinarily long tip labels, even though they wouldn't be plotted. I'm using R versi