I was unable to install Biostrings using my R GUI (RKWard for Ubuntu), so
this may help if anyone runs into the same problem as me ...
I was getting the error "Error in `row.names<-.data.frame`(`*tmp*`, value =
aa) : duplicate 'row.names' are not allowed".
This appeared to be a GUI specific error
Dne So 9. ledna 2016 13:29:46, Donald Miles napsal(a):
> Dear All,
>
> I receive the same error as Gabriela when I try to load phytools in R or R
> Studio.
>
> Here is the text:
>
> library("phytools",
> lib.loc="/Library/Frameworks/R.framework/Versions/3.2/Resources/library")
> Error in loadNam
Hi all,
you have to install the Biostrings package from bioconductor. Than it
should works. Phangorn has a dependency on biostrings and phytools depend
on phangorn.
Have a nice weekend
Klaus
Am 09.01.2016 16:35 schrieb "Donald Miles" :
> Dear All,
>
> I receive the same error as Gabriela when I tr
Thank you William. I was just about to comment the same. It is also
possible that a fresh install from GitHub will correctly install Biostrings:
library(devtools)
install_github("liamrevell/phytools")
All the best, Liam
Liam J. Revell, Associate Professor of Biology
University of Massachusetts
Klaus Schliep mentioned this and a solution in a post in December:
https://stat.ethz.ch/pipermail/r-sig-phylo/2015-December/004478.html
>From the post:
> To solve the problem simply install the Biostrings package first
>
> source("http://bioconductor.org/biocLite.R";)
> biocLite("Biostrings")
>
>
Dear All,
I receive the same error as Gabriela when I try to load phytools in R or R
Studio.
Here is the text:
library("phytools",
lib.loc="/Library/Frameworks/R.framework/Versions/3.2/Resources/library")
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck
= vI[[j]]) :
t
Hello
Dne So 9. ledna 2016 13:11:45, Gabriela Wofkova napsal(a):
> Hello,
>
> I have an problem with loading package "phytools". I have the newest
> version of R studio and it cannot load package "Biostrings" which is
> reqired to package "phytools". Also it not works in R program, too. Can you
Hello,
I have an problem with loading package "phytools". I have the newest
version of R studio and it cannot load package "Biostrings" which is
reqired to package "phytools". Also it not works in R program, too. Can you
have any idea, how to evade this?
I need to use "read.newick" and load phy
