Re: [R-sig-phylo] Seeking list of nucleotide substitution models

2013-04-06 Thread Emmanuel Paradis
: Daniel Barker d...@st-andrews.ac.uk Sender: r-sig-phylo-boun...@r-project.org Date: Fri, 5 Apr 2013 16:23:36 To: r-sig-phylo@r-project.orgr-sig-phylo@r-project.org Subject: [R-sig-phylo] Seeking list of nucleotide substitution models Hello, Is there a review or list of ~every specific nucleotide

Re: [R-sig-phylo] Seeking list of nucleotide substitution models

2013-04-06 Thread Joe Felsenstein
Emmanuel Paradis answered Daniel Barker's inquiry: Is there a review or list of ~every specific nucleotide substitution model that has been proposed or used in the literature (with references)? Hi Daniel, Have you looked at the help page of dist.dna? The list of references there is

[R-sig-phylo] Seeking list of nucleotide substitution models

2013-04-05 Thread Daniel Barker
Hello, Is there a review or list of ~every specific nucleotide substitution model that has been proposed or used in the literature (with references)? I'm interested in reversible models. The most exhaustive list I have is from the jModeltest documentation,