Re: [R-sig-phylo] dist.nodes crashing with big trees

2015-10-20 Thread Gustavo Burin Ferreira
Hey David and Nick, thanks a lot for the quick responses! I think I wasn't very clear in the first e-mail. What I get is actually an error from within dist.nodes, not when calling it. I've tried to use chainsaw2 and in the beginning it appeared to be working quite well. However after some

Re: [R-sig-phylo] dist.nodes crashing with big trees

2015-10-16 Thread David Bapst
Hi Gustavo, I'm paleotree's author and maintainer. Just to be clear that I understand your problem, I believe you are saying that when you use timeSliceTree, you are getting an error that the internal call to dist.nodes is failing? Is that right? The first thought I have is that maybe the

Re: [R-sig-phylo] dist.nodes crashing with big trees

2015-10-16 Thread Nick Matzke
Hi! I re-did chainsaw at some point, now there is chainsaw2. However, googling that gets you horror movies, so here is a link with example code: https://groups.google.com/d/msg/biogeobears/Jy9uYckOL7s/XuNZ0B3jAwAJ (the discussion there points out a rare case where this crashes, but for most