Re: [R-sig-phylo] Possible Bug in ape::read.tree

Hi, George, Ape package do not read tree with singletons, yet. New version will read. You can use readTree from phytools package for while. Best regards, Mario On 5 Sep 2017 5:53 p.m., "George Vega Yon" wrote: Hi, When trying to read this tree with the ape::read.tree

Re: [R-sig-phylo] Possible Bug in ape::read.tree

Hi George. Mario is correct that phytools can read a tree with singleton nodes (if that is indeed your problem), but the name of the function is read.newick. Good luck! - Liam Liam J. Revell, Associate Professor of Biology University of Massachusetts Boston web:

[R-sig-phylo] Possible Bug in ape::read.tree

Hi, When trying to read this tree with the ape::read.tree function :

Re: [R-sig-phylo] Possible Bug in ape::read.tree

Hi Mario, That sounds great! Thanks, George G. Vega Yon +1 (626) 381 8171 http://cana.usc.edu/vegayon On Tue, Sep 5, 2017 at 2:08 PM, Mario José Marques-Azevedo < mariojm...@gmail.com> wrote: > Hi, George, > > Ape package do not read tree with singletons, yet. New version will read. > You can

Re: [R-sig-phylo] Possible Bug in ape::read.tree

Dear George & list, you can try install the development version of ape, which can handle singleton nodes: download.packages("ape", ".", repos = "http://ape-package.ird.fr/;) and than install the package from source. See http://ape-package.ird.fr/ape_installation.html for more details. For you tree