Hi
I don't see why you cannot it with cophylo. All comes down to
configuring assoc (matrix containing the tip labels in tr1 to match to
the tip labels in tr2) correctly.
All the best
Juan A. Balbuena
El 17/06/2019 a las 12:03, Sa
El 17/06/2019 a las 12:03, Saleh Rahimlouye Barabi escribió:
Yes. Just to echo Juan, there should be no problem in your case if you
specify the desired matching in your association table, provided to
cophylo via the argument assoc.
In your case, for instance, you may have M._loti_1 and M._loti_2 in one
tree, but just M._loti in the other, in which case
Maybe look at the function tanglegram() in the dendexted R package.
Good luck!
G.
On Mon, 17 Jun 2019 at 06:03, Saleh Rahimlouye Barabi
wrote:
> Hello,
>
>
>
> I want to plot two phylogenetic trees face-to-face using phytools::cophylo
> function. I see there is no possibility to connect 2
I also just pushed an update to phytools that now permits exact
duplicate tip labels in a cophylo plot. You can get this update by running:
library(devtools)
install_github("liamrevell/phytools")
with devtools installed.
More details about the update can be seen on my blog:
Hello,
I want to plot two phylogenetic trees face-to-face using phytools::cophylo
function. I see there is no possibility to connect 2 or 3 same taxa in a tree
to one taxon in the other tree (attached). Is there anyway doing this in R?
Best
Saleh Rahimlou
Ph.D. Candidate
Department of Botany
