Re: [R-sig-phylo] how to append multiple gene files

Dear Roi, I have a function 'c.genes' in my 'phyloch' package (http:// www.christophheibl.de/Rpackages.html), which I regularly use to build multi-gene alignments. The code is not very elegant, but it works. Note that ‘c.genes‘ requires identical taxon names for sequences to be matched.

Re: [R-sig-phylo] conversion class phylog into class phylo

Hi Jürgen, Jürgen Kluge klugejuer...@gmx.de a écrit : Dear all. I search for a possibility to transform phylogenetic data from class 'phylog' (which is processed by ade4) to calss 'phylo' which I want to use within commands of 'picante' Here is a short dataframe with 5 species, transformed

Re: [R-sig-phylo] negative lambda in gls with corPagel?

I would just note that 18 species is pretty small for this sort of fitting. Cheers, Ted Theodore Garland, Jr., Ph.D. Professor Department of Biology University of California Riverside, CA 92521 Phone: (951) 827-3524 = Ted's office (with answering machine) Phone: (951) 827-5724 =