Hi Jason,
See base.freq() that you can combine with apply() to lapply()
depending on how your data are structured.
Emmanuel
On Fri, 29 Oct 2010 14:12:35 -0700 (PDT)
Jason S <jas2...@yahoo.com> wrote:
Dear all,
Is there a function to take an alignment (say, using
read.nexus.data()) and
output the base composition of each sequence?
thanks a lot!
Jason
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