Hi Dave (I've Cc'd the list back in, in case someone else knows the answer),
Thanks for the suggestions. You're rightâthe simulated data does plot in
matching order (both for your example and Emmanuel's original one), so
Emmanuel's code is not the problem. The difficulty is apparently in
Hi Enrico et al.,
Thanks for that hint; works very well! The traits are now plotted next to
the correct order. I had to slightly modify it in order to reorder my data
object, though:
treeordered.data - data[my.tree$tip.label[my.tree$edge[my.tree$edge[, 2]
= Ntip(my.tree), 2]],]
On a related
Hello again,
I tracked the strange ordering error down to the inclusion of c(NA, â¦) in
the height argument of boxplot. Removing that correctly maps colours to
factors, at the expense of dropping the entire boxplot down one unit.
Thanks again,
Roger
---
Roger Close
PhD Student
School of
Hi All,
For another way, below is code that uses the ade4 library (phylog
objects) to plot a barchart next to a phylogenetic tree. It is based on
the dot.chart.phylog function... I am not sure how well it will work for
your data, but it has worked well for most of what I have thrown at it.
