Re: [R-sig-phylo] Sister-clade analysis of discrete characters

2015-04-16 Thread Joe Felsenstein
I mentioned earlier the alternative of having two-state discrete characters each modeled by an underlying quantitative character with a developmental threshold. This can in principle be extended to three or more states. In fact, Sewall Wright's original example in 1934 had three states. But

[R-sig-phylo] New package apex 1.0.0 released on CRAN

2015-04-16 Thread Jombart, Thibaut
Dear all, (apologies for multiple posting) On behalf of the apex development team (E. Paradis, K. Schliep, Z. Kamvar, R. Harris and myself), I am happy to announce that apex has been released on CRAN: http://cran.r-project.org/web/packages/apex/index.html This package provides tools for