speciation rate, increasing extinction rate or both using a different package?
Thank you very much!
--
Mariana Vasconcellos
Ecology, Evolution Behavior
Integrative Biology
The University of Texas at Austin
On Sep 3, 2013, at 10:05 PM, Liam J. Revell liam.rev...@umb.edu wrote
,
You may try the function bd.time in ape. The companion paper gives examples
similar to what laser does.
Best,
Emmanuel
-Original Message-
From: Mariana Vasconcellos marian...@utexas.edu
Sender: r-sig-phylo-boun...@r-project.org
Date: Tue, 3 Sep 2013 23:20:17
To: Liam J
Dear all:
I am trying to label the posterior probabilities in the nodes of the tree I
generated in BEAST. Using nodelabels() doesn't seem to work. I also tried
read.beast() using the package phyloch, but the following error appears:
tree-read.beast(BEASToutput.tre)
Error in (i2 + 1):end :
Dear all:
I want to display the posterior probabilities in a tree generated in BEAST. I
have seen the following solution for that:
https://stat.ethz.ch/pipermail/r-sig-phylo/2013-June/002829.html
However, when using read.beast () using the phyloch package the following error
come up: Error in
Thank you Santiago, but this didn't solve my problem. I have already tried this
and it didn't work. I don't understand what the error: Error in (i2 + 1):end :
argument of length 0 means.
--
Mariana Mira Vasconcellos
marian...@utexas.edu
PhD candidate
Ecology, Evolution
Hi all:
I am using the phylock package to read and plot a BEAST tree in R. I want to
remove outgroups from my plot, therefore I used the extract.clade2() from the
phylock package. But, when I try to plot the new phylogeny with the extracted
clade, R quits unexpectedly. I have tried to plot that
