Dear all,
I am working on a data set composed of bacterial genomic sequences (a
few genes) associated to phenotypic values (in-vitro resistance to
antibiotics, a numerical value discretised into a binary class). Of
note, the bacterial isolates were sampled non-uniformly at different
times and
You may use dist.topo from the ape package, there are a couple of tree
distance functions implemented.
2014-04-14 13:13 GMT+01:00 Chris Buddenhagen cbuddenha...@gmail.com:
I would like to make pairwise comparisons of topological similarity between
all possible combinations of 518 gene trees.
Hi all,
I know there's plenty of methods (many already available in R) to evaluate
phylogenetic signal of a tree with respect to a character.
But I have found the term 'phylogenetic signal' also in the context of a
sole alignment/tree without the presence of associated characters. For
instance, a
