[R-sig-phylo] error with bind.tree + ladderize

I came across the following error: when trying to ladderize a tree that had gone through bind.tree, the tree becomes corrupted. Specifically, I added a single tip to an internal node (code to replicate below). Note: 1) this error did not seem to occur when attaching the tip sister to an original

Re: [R-sig-phylo] Problem date consensus phylogeny

I typically use a non-R tool like treeannotator (from the BEAST package) to do this type of thing, especially when involving large numbers of big trees. HTH. Joseph. On Wed, Jan 23, 2019 at 4:42 PM Alina van dijk wrote: > Hi everyone, > > My name is Alina, I'm attending master degree in

Re: [R-sig-phylo] AGY coding

Hi Karla. Not sure how you have your sequences stored, but if as a string you can do it yourself: str <- gsub("C|T", "Y", str); As for RY vs. AGY, this paper is very nice. Basically, if you are using them for