[R-sig-phylo] Generating all possible phylogenies...

2011-07-21 Thread Liutauras Rusaitis
Hello, Is it possible to use Ape Library to generate all possible evolutionary tree structures given a fixed number of nodes? We're studying plant leaf evolutions and we need to test each evolutionary tree on our models. We realize the number of trees would be huge, so we'd chooce only the

Re: [R-sig-phylo] Generating all possible phylogenies...

2011-07-21 Thread David Bapst
Liutauras- allTrees() in the phangorn package can calculate all possible trees for up to 10 tips. Cheers, -Dave, UChicago On Thu, Jul 21, 2011 at 10:20 AM, Liutauras Rusaitis liutauras.rusai...@st-annes.ox.ac.uk wrote: Hello, Is it possible to use Ape Library to generate all possible

Re: [R-sig-phylo] Generating all possible phylogenies...

2011-07-21 Thread Emmanuel Paradis
-phylo-boun...@r-project.org Date: Thu, 21 Jul 2011 10:26:40 To: Liutauras Rusaitisliutauras.rusai...@st-annes.ox.ac.uk Cc: r-sig-phylo@r-project.orgr-sig-phylo@r-project.org Subject: Re: [R-sig-phylo] Generating all possible phylogenies... Liutauras- allTrees() in the phangorn package can calculate