David,
Your example works correctly for me. A bug was fixed in prop.part() in
ape 2.7 but this apparently affected some unrooted trees, while your
trees are clearly rooted.
Best,
Emmanuel
David Bapst wrote on 26/03/2011 04:32:
Hello all,
I was using prop.part() to identify nodes shared
Hello all,
I was using prop.part() to identify nodes shared between several topologies,
when I discovered a strange error, where prop.part() was underestimating the
number of partitions found in common. I was able to fix the error for some
comparisons by outputting the trees as Newick strings and
