[R-sig-phylo] Problem loading phytools on Mac

2014-12-22 Thread Gabriel Yedid
Hello list, Has anyone else experienced the following error when trying to load phytools on a Mac, even though it seems to have been successfully installed? Note that this problem doesn't seem to be with phytools itself, but with rgl: library(phytools) Loading required package: ape Loading

Re: [R-sig-phylo] Problem loading phytools on Mac

2014-12-22 Thread Jonathan Chang
Hi Gabe, It looks like rgl is trying to load the x11 libraries. Apple no longer supports x11 with the release of Mountain Lion. Try installing xquartz (the x11 replacement) and see if it works. Jonathan On Mon, Dec 22, 2014 at 1:33 AM, Gabriel Yedid gyedi...@gmail.com wrote: Hello list, Has

Re: [R-sig-phylo] Problem loading phytools on Mac

2014-12-22 Thread Klaus Schliep
Hi Gabriel, the dependency for the rgl package comes from my phangorn package. You can download the development version which does not need rgl installed the following way: library(devtools) install_github(KlausVigo/phangorn) It seems that apple is trying hard not to be a linux system any more