Re: [R-sig-phylo] Question about Kcalc with >1 data points per species

2012-06-06 Thread Liam J. Revell
Hi Jonathan. The thing to do in this case is to estimate K with within-species variability. This is described in Ives et al. (2007; Syst. Biol.) and implemented in the phytools function phylosig. This will give an unbiased estimate of K. (K estimated when within-species variability is ignored

[R-sig-phylo] Question about Kcalc with >1 data points per species

2012-06-06 Thread Jonathan Benstead
Dear r-sig-phylo members - Colleagues and I came across an old post about calculating the Blomberg K statistic in studies where there is more than one data point for some species, by using a tree that includes zero-branch lengths for those multiple studies. This seems ideal for our data, which h