Dear Justyna
tr$edge does not store coordinates, see help(phylo).
if you want the coordinates of the nodes of your last plotted tree you can
get them:
library(ape)
tree = rtree(5)
nodelabels()
tiplabels()
last_plot = get("last_plot.phylo", envir = .PlotPhyloEnv)
last_plot$xx and last_plot$yy
Dear Ape users,
I'be grateful for your help with my ape problems.
I find it difficult to figure out how I can look at the distances between the
main nodes generated in the phylogenetic tree below. My idea is to extract the
distances between NBCs to hiMBCs. Somehow looking at the exemplary
Coding, data management, and Shiny applications using RStudio for
evolutionary biologists and ecologists (CDSR01)
http://www.prstatistics.com/course/coding-data-management-and-shiny-applications-using-rstudio-for-evolutionary-biologists-and-ecologists-cdsr01/
This course will run from the 15th
