Ape package do not read tree with singletons, yet. New version will read.
You can use readTree from phytools package for while.
On 5 Sep 2017 5:53 p.m., "George Vega Yon" wrote:
When trying to read this tree with the ape::read.tree
Hi George. Mario is correct that phytools can read a tree with singleton
nodes (if that is indeed your problem), but the name of the function is
read.newick. Good luck! - Liam
Liam J. Revell, Associate Professor of Biology
University of Massachusetts Boston
When trying to read this tree with the ape::read.tree function :
That sounds great!
George G. Vega Yon
+1 (626) 381 8171
On Tue, Sep 5, 2017 at 2:08 PM, Mario José Marques-Azevedo <
> Hi, George,
> Ape package do not read tree with singletons, yet. New version will read.
> You can
Dear George & list,
you can try install the development version of ape, which can handle
download.packages("ape", ".", repos = "http://ape-package.ird.fr/;)
and than install the package from source. See
http://ape-package.ird.fr/ape_installation.html for more details.
For you tree