Re: [R-sig-phylo] AGY coding

Hi Joseph, The object is stored as DNAbin. Thanks for the paper. Some of the tips on my phylogeny have very biased GC content and I was planning on using some sort of recoding (RY or AGY), but the paper you mentioned makes some important points. Karla On Fri, Aug 24, 2018 at 4:52 PM Joseph Brow

Re: [R-sig-phylo] understanding variance-covariance matrix

Hi Agus, I just posted some courses I did a while ago to understand the variances and covariances of a BM process on trees and time-series (R markdown): https://github.com/JClavel/Examples This is also based on the previous mentioned references illustrated wi