Re: [R-sig-phylo] estimate ancestral state with OUwie models

2018-06-11 Thread Simone Blomberg
This sounded wrong to me, as the OU process should be agnostic to the dataset: There are no restrictions inherent in the OU process that apply particularly to phylogenetic data, whether the tree is ultrametric or not. I re-read Slater 2014 and it is clear that you can use branch length

Re: [R-sig-phylo] estimate ancestral state with OUwie models

2018-06-12 Thread Simone Blomberg
lu, HI 96822 Office: 808-956-4713 Dept: 808-956-8617 Lab: 808-956-5867 FAX: 808-956-4745 http://butlerlab.org http://manoa.hawaii.edu/biology/people/marguerite-butler http://www2.hawaii.edu/~mbutler On Jun 11, 2018, at 7:33 PM, Simone Blomberg mailto:s.blombe...@uq.edu.au>> wrote:

Re: [R-sig-phylo] question regarding PGLS

2021-05-30 Thread Simone Blomberg
@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ -- Simone Blomberg, BSc (Hons), PhD, MAppStat. Senior Lecturer and Consultant Statistician School of Biological Sciences The University of Queensland St. Lucia Queensl

Re: [R-sig-phylo] Model Selection and PGLS

2021-07-04 Thread Simone Blomberg
Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ -- Simone Blomberg, BSc (Hons), PhD, MAppStat (she/her) Senior Lecturer and Consultant Statistician School of Biological Sciences The University of Queensland St. Lucia Queensland 4072 Australia T: +61 7 3365 2506 email

Re: [R-sig-phylo] Model Selection and PGLS

2021-07-04 Thread Simone Blomberg
.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ -- Simone Blomberg, BSc (Hons), PhD, MAppStat (she/her) Senior Lecturer and Consultant Statistician School of Biological Sciences The University of Queensland St. Lucia Queensland

Re: [R-sig-phylo] Model Selection and PGLS

2021-07-02 Thread Simone Blomberg
/. Which is not what > would be expected if mu were modelling a phylogenetic correction > factor (if nothing else, the range of mu should probably not span > zero). So it suggests to me I'm not doing something right. I know that > PGLS doesn't always result in better fits than OLS, but

Re: [R-sig-phylo] de Villemereuil et al. 2012 in R

2021-03-03 Thread Simone Blomberg
eted]] ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ -- Simone Blomberg, BSc (Hons), PhD, MAppStat, AStat. Senior Lecturer and Consul