Dear Listserve, I'm having trouble converting a file resulting from the function “ncbi_byname” (example below), which is a list of data frames including taxon names, gene description, DNA sequences etc, to a DNAbin file.
Does anyone know of any function or solution to this problem?
Ex:
head(dna_tad_12s)
[[1]]
taxon gene_desc gi_no acc_no length sequence spused
1 Hylomantis_aspera NA NA NA NA NA NA
[[2]]
taxon
1 Allobates_femoralis
gene_desc
1 Epipedobates femoralis 16S ribosomal RNA gene, partial sequence;
mitochondrial gene for mitochondrial product
gi_no acc_no length
1 7682283 <NA> 547
sequence
1
GTCAAGCCTGCCCAGTGACATTGTTCAACGGCCGCGGTATCCTAACCGTGCGAAGGTAGCGTAATCACTTGTCCTT
TAAATAAGGACTAGTATGAACGGCTTCACGAAGGCTATACTGTCTCCTTAATCTAATCAGTTAAACTAATCTCCCC
GTGAAGAAGCGGGGATTCATTTATAAGACGAGAAGACCCTATGGAGCTTTAAACATCTAAGACACTTGATTACACC
CACTAAACTTCACGCAACCTATCATTTTGTCTTAAGTTTTAGGTTGGGGTGACCACGGAGAAAAATTTAACCTCCA
CGTAGAAAGAAAATTCTTTTCTAAGCAAAAAGCCACATCTTAACGCATCAATATATTGACTTAAATTGACCCAATT
TCTTGCTCAACGAACCAAGTTACCCTAGGGATAACAGCGCAATCCNCTTTAAGAGCTCCTATCGACAAGCGGGCTT
ACGACCTCGATGTTGGATCAGGGTATCCTAATGGTGCAACAGCTATTAACGGTTCGTTTGTTCAACGATTAAAACC
CTACGTGATCTGAGT
spused
1 Epipedobates femoralis
Thanks,
Cheers,
Thiago
___________________________________________________________________
Thiago A. Leão Pires
Ph.D. student | Campinas State University - UNICAMP
Collaborator Researcher – Biogeography, Ecology and Evolution Lab - UNIFESP
Visitor Ph.D. student – Research School of Biology - ANU
<http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4298681Z0>
<http://www.thiagoaugustopires.wix.com/naturevisions> <Skype ID:
thiago.augusto.pires>
<https://www.researchgate.net/profile/Thiago_Leao-Pires>
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