Hi,
To answer Elizabeth's question: there is no function that does what
you asked for in your first message. Liam's solution is certainly the
best solution for the moment. I'll have a look at it later. The code
checkValidPhylo() needs to be dusted off a bit: the diagnostic "
MODERATE: some
Thank you very much, I’ll try that!
> On Nov 5, 2019, at 2:20 PM, Liam Revell wrote:
>
> Hi Elizabeth.
>
> This does not do exactly what you want, but it is possible to use
> capture.output() to grab the printout of checkValidPhylo() and then
> grep() to see if it contains instances of
Hi Elizabeth,
There's a lot of ways for trees to be wrong, and surely no
tree-checking or tree-fixing function can handle all possibilities.
Dating trees and simulating trees can be a messy business, so I used
to often hard-crash R with C++ errors all the time until I wrote
functions to try to
Hi Elizabeth.
This does not do exactly what you want, but it is possible to use
capture.output() to grab the printout of checkValidPhylo() and then
grep() to see if it contains instances of "MODERATE" or "FATAL" errors.
The following simple function does that. It returns 0 if neither
MODERATE
