d to the blog is
perfectly fine.
Best wishes,
Kev
From: Liam J. Revell [liam.rev...@umb.edu]
Sent: 27 February 2017 21:57
To: Arbuckle, Kevin; R phylo list
Subject: Re: [R-sig-phylo] Plotting uncertainty in continuous ASR
Hi Kevin.
I now show one way t
: 27 February 2017 21:57
To: Arbuckle, Kevin; R phylo list
Subject: Re: [R-sig-phylo] Plotting uncertainty in continuous ASR
Hi Kevin.
I now show one way to do this here:
http://blog.phytools.org/2017/02/more-on-adding-error-bars-to-contmap.html.
All the best, Liam
Liam J. Revell, Associate
Hi Dave.
Yes. It is not perfect, but I have shown how to do this here:
http://blog.phytools.org/2017/02/more-on-adding-error-bars-to-contmap.html.
All the best, Liam
Liam J. Revell, Associate Professor of Biology
University of Massachusetts Boston
web: http://faculty.umb.edu/liam.revell/
emai
, Kevin; r-sig-phylo@r-project.org
Subject: Re: [R-sig-phylo] Plotting uncertainty in continuous ASR
Hi Kevin.
This is not automatic - but it is indeed fairly easy to do using
phytools. To be honest, I thought this would look terrible - but it
actually looks much better than I expected, at l
That's really cool, Liam. Would it also be possible for one to do
multiple such error bars per node, for plotting ASRs for multiple
traits?
-Dave
On Mon, Feb 27, 2017 at 12:13 PM, Liam J. Revell wrote:
> Hi Kevin.
>
> This is not automatic - but it is indeed fairly easy to do using phytools.
> To
Hi Kevin.
This is not automatic - but it is indeed fairly easy to do using
phytools. To be honest, I thought this would look terrible - but it
actually looks much better than I expected, at least for a relatively
small tree. I have posted a demo to my blog here:
http://blog.phytools.org/2017/
Not sure if a function for that already exists. You could plot posterior
distributions at each node (or perhaps, nodes of interest) if that is workable
graphically…Alternatively you could print the numerical 95% ci or HPD interval
at each node, along with mean or median value (for a bayesian rec
