Roland, I'm not quite sure that I follow exactly what you are proposing,
but you may be interested in our recent preprint on handling inapplicable
data:
https://www.biorxiv.org/content/early/2017/10/26/209775
This solution to inapplicable data is implemented in the R package
TreeSearch. I'm still
Hi Luke,
This is going a bit off-topic, but BEAST2 can definitely work with
multistate characters. I think you need to manually edit the XML file,
though.
Cheers,
Eduardo
2018-02-09 16:05 GMT+01:00 Matthews, Luke :
> This is a reply to the message copied below from Roland Sookias
>
> Hi Roland
This is a reply to the message copied below from Roland Sookias
Hi Roland,
This depends slightly on the structure of the data. If you have crocodile tails
with a set of discrete shape states in the same anatomical part, then I would
recommend coding it as a multistate characteristic. MrBayes pro
