> *To:* Eduardo Ascarrunz
> *Cc:* Wierzbinska, Justyna; r-sig-phylo@r-project.org
> *Subject:* Re: [R-sig-phylo] distances between the nodes
>
>
>
> Dear Justyna
>
> tr$edge does not store coordinates, see help(phylo).
>
> if you want the coordinates of the nodes of
Dear Klaus,
Thanks a lot for your help
and what is in that case xx and yy?
Justyna
From: Klaus Schliep [mailto:klaus.schl...@gmail.com]
Sent: Friday, February 24, 2017 6:13 PM
To: Eduardo Ascarrunz
Cc: Wierzbinska, Justyna; r-sig-phylo@r-project.org
Subject: Re: [R-sig-phylo] distances between
Dear Justyna
tr$edge does not store coordinates, see help(phylo).
if you want the coordinates of the nodes of your last plotted tree you can
get them:
library(ape)
tree = rtree(5)
nodelabels()
tiplabels()
last_plot = get("last_plot.phylo", envir = .PlotPhyloEnv)
last_plot$xx and last_plot$yy conta
Hi Justyna,
If you want patristic distances (or node distances) you can use distTips
from the adephylo package.
To make edgelabels show the branch lengths you can use
edgelabels(tr$edge.length)
Does that do what you wanted?
Cheers,
Eduardo
2017-02-23 16:41 GMT+01:00 Wierzbinska, Justyna <
j.w
