Re: [R-sig-phylo] error when using function read.GenBank in ape
Ah, OK, it makes sense then. Thank You for this key point. :-) Yours, V. Dne pondělí 21. listopadu 2016 19:03:03 CET jste napsal(a): > Maybe I can clarify this point... The testing versions of ape are not > intended to be on CRAN. That's why they have version numbers with four > parts, so that they are always larger than the current version number on > CRAN but less than the upcoming one. Thus, the update mechanism of R > should work properly if you installed a testing version. > > Best, > > Emmanuel > > Le 21/11/2016 à 17:59, Vojtěch Zeisek a écrit : > > Hello, > > Emmanuel, the problem was/is, that CRAN has version 3.5 (further > > subversion > > not specified) and there read.GenBank is broken. Installation from Your > > web > > went fine. i was wondering if 3.5.10 or above is/should be in CRAN. The > > fix() is nice trick, thank You. Anyway, I'm looking forward 4.0. > > Sincerely, > > V. > > > > Dne pondělí 21. listopadu 2016 13:25:12 CET jste napsal(a): > >> Hi Vojtěch, > >> > >> ape 4.0 is not yet on CRAN. We are running more tests. > >> > >> You could use the testing version: there won't be substantial changes > >> once it is on CRAN. > >> > >> If you cannot install the testing version from ape-package.ird.fr (maybe > >> mostly for users of MacOS with no compiling tools), a simple fix to this > >> issue is to run: > >> > >> fix(read.GenBank) > >> > >> and replace "http:" by "https:", save and close. > >> > >> Best, > >> > >> Emmanuel > >> > >> Le 19/11/2016 à 09:48, Vojtěch Zeisek a écrit : > >>> Hello, > >>> is it already in CRAN? read.GenBank for me failed with newest version > >>> from > >>> CRAN, I had to update directly from Ape's website... > >>> Sincerely, > >>> V. > >>> > >>> Dne sobota 12. listopadu 2016 13:16:47 CET, Eduardo Ascarrunz napsal(a): > Hi Emmanuel, > > Right! Sorry I misspoke. > > Best, > > Eduardo > > 2016-11-11 23:32 GMT+01:00 Emmanuel Paradis : > > Hi Eduardo & Ting-Wen, > > > > ape 4.0 is not yet released. The available version is 3.5-0.10 and, > > you > > are right Eduardo, it fixes this issue. The instructions to install > > this > > new version of ape is here: > > > > http://ape-package.ird.fr/ape_installation.html#versions > > > > The issue (not really a bug, strictly speaking) is because NCBI > > servers > > do > > not accept HTTP requests anymore like many web services. The new > > version > > of > > read.GenBank() uses HTTPS in place of HTTP. The relevant information > > from > > NCBI can be found there: > > > > https://www.ncbi.nlm.nih.gov/news/06-10-2016-ncbi-https/ > > > > Best, > > > > Emmanuel > > > > Le 11/11/2016 à 09:22, Eduardo Ascarrunz a écrit : > >> Hi Ting-Wen. > >> > >> Are you using the latest version of ape? Emmanuel released ape v.4.0 > >> yesterday with a bug fix for that function. > >> > >> Best, > >> > >> Eduardo > >> > >> 2016-11-11 0:35 GMT+01:00 Chen, Ting-Wen < > >> ting-wen.c...@biologie.uni-goettingen.de>: > >> > >> Dear all, > >> > >>> recently I got an error when downloading sequences in R using MacOS > >>> 10.12 > >>> (but no problem when using WIndows 7). I was using the function > >>> read.GenBank in package ape and pretty sure my laptop was connecting > >>> to > >>> the > >>> internet. Following is how the error looks like: > >>> > >>> R version 3.3.2 (2016-10-31) -- "Sincere Pumpkin Patch" > >>> Copyright (C) 2016 The R Foundation for Statistical Computing > >>> Platform: x86_64-apple-darwin13.4.0 (64-bit) > >>> ... > >>> [R.app GUI 1.68 (7288) x86_64-apple-darwin13.4.0] > >>> > >>> library(ape) > >>> > read.GenBank("U15717") > >>> > >>> Error in file(file, "r") : cannot open the connection > >>> > >>> Does anybody know how to solve this problem? > >>> > >>> All the best > >>> Ting-Wen -- Vojtěch Zeisek https://trapa.cz/en/ Department of Botany Faculty of Science, Charles University Benátská 433/2, Prague, 12801, CZ https://www.natur.cuni.cz/biology/botany/ Institute of Botany, Academy of Sciences Zámek 1, Průhonice, 25243, CZ http://www.ibot.cas.cz/en/ Czech Republic signature.asc Description: This is a digitally signed message part. ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
Re: [R-sig-phylo] error when using function read.GenBank in ape
Maybe I can clarify this point... The testing versions of ape are not intended to be on CRAN. That's why they have version numbers with four parts, so that they are always larger than the current version number on CRAN but less than the upcoming one. Thus, the update mechanism of R should work properly if you installed a testing version. Best, Emmanuel Le 21/11/2016 à 17:59, Vojtěch Zeisek a écrit : Hello, Emmanuel, the problem was/is, that CRAN has version 3.5 (further subversion not specified) and there read.GenBank is broken. Installation from Your web went fine. i was wondering if 3.5.10 or above is/should be in CRAN. The fix() is nice trick, thank You. Anyway, I'm looking forward 4.0. Sincerely, V. Dne pondělí 21. listopadu 2016 13:25:12 CET jste napsal(a): Hi Vojtěch, ape 4.0 is not yet on CRAN. We are running more tests. You could use the testing version: there won't be substantial changes once it is on CRAN. If you cannot install the testing version from ape-package.ird.fr (maybe mostly for users of MacOS with no compiling tools), a simple fix to this issue is to run: fix(read.GenBank) and replace "http:" by "https:", save and close. Best, Emmanuel Le 19/11/2016 à 09:48, Vojtěch Zeisek a écrit : Hello, is it already in CRAN? read.GenBank for me failed with newest version from CRAN, I had to update directly from Ape's website... Sincerely, V. Dne sobota 12. listopadu 2016 13:16:47 CET, Eduardo Ascarrunz napsal(a): Hi Emmanuel, Right! Sorry I misspoke. Best, Eduardo 2016-11-11 23:32 GMT+01:00 Emmanuel Paradis : Hi Eduardo & Ting-Wen, ape 4.0 is not yet released. The available version is 3.5-0.10 and, you are right Eduardo, it fixes this issue. The instructions to install this new version of ape is here: http://ape-package.ird.fr/ape_installation.html#versions The issue (not really a bug, strictly speaking) is because NCBI servers do not accept HTTP requests anymore like many web services. The new version of read.GenBank() uses HTTPS in place of HTTP. The relevant information from NCBI can be found there: https://www.ncbi.nlm.nih.gov/news/06-10-2016-ncbi-https/ Best, Emmanuel Le 11/11/2016 à 09:22, Eduardo Ascarrunz a écrit : Hi Ting-Wen. Are you using the latest version of ape? Emmanuel released ape v.4.0 yesterday with a bug fix for that function. Best, Eduardo 2016-11-11 0:35 GMT+01:00 Chen, Ting-Wen < ting-wen.c...@biologie.uni-goettingen.de>: Dear all, recently I got an error when downloading sequences in R using MacOS 10.12 (but no problem when using WIndows 7). I was using the function read.GenBank in package ape and pretty sure my laptop was connecting to the internet. Following is how the error looks like: R version 3.3.2 (2016-10-31) -- "Sincere Pumpkin Patch" Copyright (C) 2016 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin13.4.0 (64-bit) ... [R.app GUI 1.68 (7288) x86_64-apple-darwin13.4.0] library(ape) read.GenBank("U15717") Error in file(file, "r") : cannot open the connection Does anybody know how to solve this problem? All the best Ting-Wen ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
Re: [R-sig-phylo] error when using function read.GenBank in ape
Hello, Emmanuel, the problem was/is, that CRAN has version 3.5 (further subversion not specified) and there read.GenBank is broken. Installation from Your web went fine. i was wondering if 3.5.10 or above is/should be in CRAN. The fix() is nice trick, thank You. Anyway, I'm looking forward 4.0. Sincerely, V. Dne pondělí 21. listopadu 2016 13:25:12 CET jste napsal(a): > Hi Vojtěch, > > ape 4.0 is not yet on CRAN. We are running more tests. > > You could use the testing version: there won't be substantial changes > once it is on CRAN. > > If you cannot install the testing version from ape-package.ird.fr (maybe > mostly for users of MacOS with no compiling tools), a simple fix to this > issue is to run: > > fix(read.GenBank) > > and replace "http:" by "https:", save and close. > > Best, > > Emmanuel > > Le 19/11/2016 à 09:48, Vojtěch Zeisek a écrit : > > Hello, > > is it already in CRAN? read.GenBank for me failed with newest version from > > CRAN, I had to update directly from Ape's website... > > Sincerely, > > V. > > > > Dne sobota 12. listopadu 2016 13:16:47 CET, Eduardo Ascarrunz napsal(a): > >> Hi Emmanuel, > >> > >> Right! Sorry I misspoke. > >> > >> Best, > >> > >> Eduardo > >> > >> 2016-11-11 23:32 GMT+01:00 Emmanuel Paradis : > >>> Hi Eduardo & Ting-Wen, > >>> > >>> ape 4.0 is not yet released. The available version is 3.5-0.10 and, you > >>> are right Eduardo, it fixes this issue. The instructions to install this > >>> new version of ape is here: > >>> > >>> http://ape-package.ird.fr/ape_installation.html#versions > >>> > >>> The issue (not really a bug, strictly speaking) is because NCBI servers > >>> do > >>> not accept HTTP requests anymore like many web services. The new version > >>> of > >>> read.GenBank() uses HTTPS in place of HTTP. The relevant information > >>> from > >>> NCBI can be found there: > >>> > >>> https://www.ncbi.nlm.nih.gov/news/06-10-2016-ncbi-https/ > >>> > >>> Best, > >>> > >>> Emmanuel > >>> > >>> Le 11/11/2016 à 09:22, Eduardo Ascarrunz a écrit : > Hi Ting-Wen. > > Are you using the latest version of ape? Emmanuel released ape v.4.0 > yesterday with a bug fix for that function. > > Best, > > Eduardo > > 2016-11-11 0:35 GMT+01:00 Chen, Ting-Wen < > ting-wen.c...@biologie.uni-goettingen.de>: > > Dear all, > > > recently I got an error when downloading sequences in R using MacOS > > 10.12 > > (but no problem when using WIndows 7). I was using the function > > read.GenBank in package ape and pretty sure my laptop was connecting > > to > > the > > internet. Following is how the error looks like: > > > > R version 3.3.2 (2016-10-31) -- "Sincere Pumpkin Patch" > > Copyright (C) 2016 The R Foundation for Statistical Computing > > Platform: x86_64-apple-darwin13.4.0 (64-bit) > > ... > > [R.app GUI 1.68 (7288) x86_64-apple-darwin13.4.0] > > > > library(ape) > > > >> read.GenBank("U15717") > > > > Error in file(file, "r") : cannot open the connection > > > > Does anybody know how to solve this problem? > > > > All the best > > Ting-Wen -- Vojtěch Zeisek https://trapa.cz/en/ Department of Botany Faculty of Science, Charles University Benátská 433/2, Prague, 12801, CZ https://www.natur.cuni.cz/biology/botany/ Institute of Botany, Academy of Sciences Zámek 1, Průhonice, 25243, CZ http://www.ibot.cas.cz/en/ Czech Republic signature.asc Description: This is a digitally signed message part. ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
Re: [R-sig-phylo] error when using function read.GenBank in ape
Hi Vojtěch, ape 4.0 is not yet on CRAN. We are running more tests. You could use the testing version: there won't be substantial changes once it is on CRAN. If you cannot install the testing version from ape-package.ird.fr (maybe mostly for users of MacOS with no compiling tools), a simple fix to this issue is to run: fix(read.GenBank) and replace "http:" by "https:", save and close. Best, Emmanuel Le 19/11/2016 à 09:48, Vojtěch Zeisek a écrit : Hello, is it already in CRAN? read.GenBank for me failed with newest version from CRAN, I had to update directly from Ape's website... Sincerely, V. Dne sobota 12. listopadu 2016 13:16:47 CET, Eduardo Ascarrunz napsal(a): Hi Emmanuel, Right! Sorry I misspoke. Best, Eduardo 2016-11-11 23:32 GMT+01:00 Emmanuel Paradis : Hi Eduardo & Ting-Wen, ape 4.0 is not yet released. The available version is 3.5-0.10 and, you are right Eduardo, it fixes this issue. The instructions to install this new version of ape is here: http://ape-package.ird.fr/ape_installation.html#versions The issue (not really a bug, strictly speaking) is because NCBI servers do not accept HTTP requests anymore like many web services. The new version of read.GenBank() uses HTTPS in place of HTTP. The relevant information from NCBI can be found there: https://www.ncbi.nlm.nih.gov/news/06-10-2016-ncbi-https/ Best, Emmanuel Le 11/11/2016 à 09:22, Eduardo Ascarrunz a écrit : Hi Ting-Wen. Are you using the latest version of ape? Emmanuel released ape v.4.0 yesterday with a bug fix for that function. Best, Eduardo 2016-11-11 0:35 GMT+01:00 Chen, Ting-Wen < ting-wen.c...@biologie.uni-goettingen.de>: Dear all, recently I got an error when downloading sequences in R using MacOS 10.12 (but no problem when using WIndows 7). I was using the function read.GenBank in package ape and pretty sure my laptop was connecting to the internet. Following is how the error looks like: R version 3.3.2 (2016-10-31) -- "Sincere Pumpkin Patch" Copyright (C) 2016 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin13.4.0 (64-bit) ... [R.app GUI 1.68 (7288) x86_64-apple-darwin13.4.0] library(ape) read.GenBank("U15717") Error in file(file, "r") : cannot open the connection Does anybody know how to solve this problem? All the best Ting-Wen ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
Re: [R-sig-phylo] error when using function read.GenBank in ape
Hello, is it already in CRAN? read.GenBank for me failed with newest version from CRAN, I had to update directly from Ape's website... Sincerely, V. Dne sobota 12. listopadu 2016 13:16:47 CET, Eduardo Ascarrunz napsal(a): > Hi Emmanuel, > > Right! Sorry I misspoke. > > Best, > > Eduardo > > 2016-11-11 23:32 GMT+01:00 Emmanuel Paradis : > > Hi Eduardo & Ting-Wen, > > > > ape 4.0 is not yet released. The available version is 3.5-0.10 and, you > > are right Eduardo, it fixes this issue. The instructions to install this > > new version of ape is here: > > > > http://ape-package.ird.fr/ape_installation.html#versions > > > > The issue (not really a bug, strictly speaking) is because NCBI servers do > > not accept HTTP requests anymore like many web services. The new version > > of > > read.GenBank() uses HTTPS in place of HTTP. The relevant information from > > NCBI can be found there: > > > > https://www.ncbi.nlm.nih.gov/news/06-10-2016-ncbi-https/ > > > > Best, > > > > Emmanuel > > > > Le 11/11/2016 à 09:22, Eduardo Ascarrunz a écrit : > >> Hi Ting-Wen. > >> > >> Are you using the latest version of ape? Emmanuel released ape v.4.0 > >> yesterday with a bug fix for that function. > >> > >> Best, > >> > >> Eduardo > >> > >> 2016-11-11 0:35 GMT+01:00 Chen, Ting-Wen < > >> ting-wen.c...@biologie.uni-goettingen.de>: > >> > >> Dear all, > >> > >>> recently I got an error when downloading sequences in R using MacOS > >>> 10.12 > >>> (but no problem when using WIndows 7). I was using the function > >>> read.GenBank in package ape and pretty sure my laptop was connecting to > >>> the > >>> internet. Following is how the error looks like: > >>> > >>> R version 3.3.2 (2016-10-31) -- "Sincere Pumpkin Patch" > >>> Copyright (C) 2016 The R Foundation for Statistical Computing > >>> Platform: x86_64-apple-darwin13.4.0 (64-bit) > >>> ... > >>> [R.app GUI 1.68 (7288) x86_64-apple-darwin13.4.0] > >>> > >>> library(ape) > >>> > read.GenBank("U15717") > >>> > >>> Error in file(file, "r") : cannot open the connection > >>> > >>> Does anybody know how to solve this problem? > >>> > >>> All the best > >>> Ting-Wen -- Vojtěch Zeisek https://trapa.cz/en/ Department of Botany Faculty of Science, Charles University Benátská 433/2, Prague, 12801, CZ https://www.natur.cuni.cz/biology/botany/ Institute of Botany, Academy of Sciences Zámek 1, Průhonice, 25243, CZ http://www.ibot.cas.cz/en/ Czech Republic signature.asc Description: This is a digitally signed message part. ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
Re: [R-sig-phylo] error when using function read.GenBank in ape
Hi Emmanuel, Right! Sorry I misspoke. Best, Eduardo 2016-11-11 23:32 GMT+01:00 Emmanuel Paradis : > Hi Eduardo & Ting-Wen, > > ape 4.0 is not yet released. The available version is 3.5-0.10 and, you > are right Eduardo, it fixes this issue. The instructions to install this > new version of ape is here: > > http://ape-package.ird.fr/ape_installation.html#versions > > The issue (not really a bug, strictly speaking) is because NCBI servers do > not accept HTTP requests anymore like many web services. The new version of > read.GenBank() uses HTTPS in place of HTTP. The relevant information from > NCBI can be found there: > > https://www.ncbi.nlm.nih.gov/news/06-10-2016-ncbi-https/ > > Best, > > Emmanuel > > > Le 11/11/2016 à 09:22, Eduardo Ascarrunz a écrit : > >> Hi Ting-Wen. >> >> Are you using the latest version of ape? Emmanuel released ape v.4.0 >> yesterday with a bug fix for that function. >> >> Best, >> >> Eduardo >> >> 2016-11-11 0:35 GMT+01:00 Chen, Ting-Wen < >> ting-wen.c...@biologie.uni-goettingen.de>: >> >> Dear all, >>> >>> recently I got an error when downloading sequences in R using MacOS 10.12 >>> (but no problem when using WIndows 7). I was using the function >>> read.GenBank in package ape and pretty sure my laptop was connecting to >>> the >>> internet. Following is how the error looks like: >>> >>> R version 3.3.2 (2016-10-31) -- "Sincere Pumpkin Patch" >>> Copyright (C) 2016 The R Foundation for Statistical Computing >>> Platform: x86_64-apple-darwin13.4.0 (64-bit) >>> ... >>> [R.app GUI 1.68 (7288) x86_64-apple-darwin13.4.0] >>> >>> library(ape) read.GenBank("U15717") >>> Error in file(file, "r") : cannot open the connection >>> >>> Does anybody know how to solve this problem? >>> >>> All the best >>> Ting-Wen >>> >>> -- >>> Ting-Wen Chen >>> J.F. Blumenbach Institute of Zoology and Anthropology >>> Georg August University Goettingen >>> Berliner Str. 28 >>> D-37073 Goettingen, Germany >>> Tel: +49-55139-10943 >>> >>> ___ >>> R-sig-phylo mailing list - R-sig-phylo@r-project.org >>> https://stat.ethz.ch/mailman/listinfo/r-sig-phylo >>> Searchable archive at http://www.mail-archive.com/r- >>> sig-ph...@r-project.org/ >>> >>> >> [[alternative HTML version deleted]] >> >> ___ >> R-sig-phylo mailing list - R-sig-phylo@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-phylo >> Searchable archive at http://www.mail-archive.com/r- >> sig-ph...@r-project.org/ >> >> >> >> >> >> [[alternative HTML version deleted]] ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
Re: [R-sig-phylo] error when using function read.GenBank in ape
Hi Eduardo & Ting-Wen, ape 4.0 is not yet released. The available version is 3.5-0.10 and, you are right Eduardo, it fixes this issue. The instructions to install this new version of ape is here: http://ape-package.ird.fr/ape_installation.html#versions The issue (not really a bug, strictly speaking) is because NCBI servers do not accept HTTP requests anymore like many web services. The new version of read.GenBank() uses HTTPS in place of HTTP. The relevant information from NCBI can be found there: https://www.ncbi.nlm.nih.gov/news/06-10-2016-ncbi-https/ Best, Emmanuel Le 11/11/2016 à 09:22, Eduardo Ascarrunz a écrit : Hi Ting-Wen. Are you using the latest version of ape? Emmanuel released ape v.4.0 yesterday with a bug fix for that function. Best, Eduardo 2016-11-11 0:35 GMT+01:00 Chen, Ting-Wen < ting-wen.c...@biologie.uni-goettingen.de>: Dear all, recently I got an error when downloading sequences in R using MacOS 10.12 (but no problem when using WIndows 7). I was using the function read.GenBank in package ape and pretty sure my laptop was connecting to the internet. Following is how the error looks like: R version 3.3.2 (2016-10-31) -- "Sincere Pumpkin Patch" Copyright (C) 2016 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin13.4.0 (64-bit) ... [R.app GUI 1.68 (7288) x86_64-apple-darwin13.4.0] library(ape) read.GenBank("U15717") Error in file(file, "r") : cannot open the connection Does anybody know how to solve this problem? All the best Ting-Wen -- Ting-Wen Chen J.F. Blumenbach Institute of Zoology and Anthropology Georg August University Goettingen Berliner Str. 28 D-37073 Goettingen, Germany Tel: +49-55139-10943 ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r- sig-ph...@r-project.org/ [[alternative HTML version deleted]] ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
Re: [R-sig-phylo] error when using function read.GenBank in ape
Hi Ting-Wen. Are you using the latest version of ape? Emmanuel released ape v.4.0 yesterday with a bug fix for that function. Best, Eduardo 2016-11-11 0:35 GMT+01:00 Chen, Ting-Wen < ting-wen.c...@biologie.uni-goettingen.de>: > Dear all, > > recently I got an error when downloading sequences in R using MacOS 10.12 > (but no problem when using WIndows 7). I was using the function > read.GenBank in package ape and pretty sure my laptop was connecting to the > internet. Following is how the error looks like: > > R version 3.3.2 (2016-10-31) -- "Sincere Pumpkin Patch" > Copyright (C) 2016 The R Foundation for Statistical Computing > Platform: x86_64-apple-darwin13.4.0 (64-bit) > ... > [R.app GUI 1.68 (7288) x86_64-apple-darwin13.4.0] > > > library(ape) > > read.GenBank("U15717") > Error in file(file, "r") : cannot open the connection > > Does anybody know how to solve this problem? > > All the best > Ting-Wen > > -- > Ting-Wen Chen > J.F. Blumenbach Institute of Zoology and Anthropology > Georg August University Goettingen > Berliner Str. 28 > D-37073 Goettingen, Germany > Tel: +49-55139-10943 > > ___ > R-sig-phylo mailing list - R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at http://www.mail-archive.com/r- > sig-ph...@r-project.org/ > [[alternative HTML version deleted]] ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/