[Rcpp-devel] Rcpp API Reference

2014-09-03 Thread Yixuan Qiu
Dear all, I believe that everyone in this list has seen the benefit of using Rcpp to incorporate C++ code and develop R packages, but it's also the fact that currently there is rarely a complete reference which documents every detail of the classes and functions inside Rcpp. To make this situation

Re: [Rcpp-devel] Errors while compiling a script (seems to be related to Fortran)

2014-09-03 Thread Dirk Eddelbuettel
Xiao, On 3 September 2014 at 21:39, Xiao He wrote: | Hi Kevin,  | | Yes, those extra includes are there because some functions taken from the MASS | package need these them. | | I rearranged the includes by placing #include before the ones | below, and was able to reduce the number of errors

Re: [Rcpp-devel] Errors while compiling a script (seems to be related to Fortran)

2014-09-03 Thread Xiao He
Hi Kevin, Yes, those extra includes are there because some functions taken from the MASS package need these them. I rearranged the includes by placing #include before the ones below, and was able to reduce the number of errors from 7 to 4. #include #include #include Is it possible for you t

Re: [Rcpp-devel] problems while upgrading to Rcpp 0.11.2

2014-09-03 Thread Kevin Ushey
(sorry -- finger slipped and submitted early) > sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8LC_MESSAGES=en_US.UTF-8 [7

Re: [Rcpp-devel] problems while upgrading to Rcpp 0.11.2

2014-09-03 Thread Kevin Ushey
Hi Pratibha, I highly doubt that the segfault is related to the optimization level. FWIW, I still cannot replicate the segfault as you described -- Ubuntu 14.04, gcc 4.8.2, and... Kevin On Wed, Sep 3, 2014 at 12:34 PM, Pratibha Rana wrote: > I think I got to the bottom of the issue. I was usi

Re: [Rcpp-devel] problems while upgrading to Rcpp 0.11.2

2014-09-03 Thread Pratibha Rana
I think I got to the bottom of the issue. I was using the -O0 option instead of the -O2 option while compiling the code. Including the -O2 option resolved the issue. Thanks Pratibha On 09/02/2014 04:49 PM, Dirk Eddelbuettel wrote: > Hi, > > On 2 September 2014 at 20:16, Pratibha Rana wrote: > | H

Re: [Rcpp-devel] Errors while compiling a script (seems to be related to Fortran)

2014-09-03 Thread Kevin Ushey
Hi Xiao, I can reproduce the error -- but why do you have the includes as such, e.g.: #include #include #include #include /* for the QR routines */ #include /* for the *sort() routines */ #include #include #define BIG DBL_MAX My best guess is that you'll have to re-organize the incl

[Rcpp-devel] Errors while compiling a script (seems to be related to Fortran)

2014-09-03 Thread Xiao He
Hi all, I tried to compile a script using the code below: Rscript compiler.R '/Users/xiaohe/WRScpp/src/test.cpp' And I got 7 error messages in total as shown below. I am on a

Re: [Rcpp-devel] Trouble with package unit test and sourceCpp()

2014-09-03 Thread Dirk Eddelbuettel
On 2 September 2014 at 20:42, Christian Gunning wrote: | I'm working on a package that includes a unit test that calls | sourceCpp() to test a particular use-case. [...] | My question is whether there's a sane workaround, or if I should give | up on these tests. Alternately, is there a cleaner wa