hat I cannot point to the Rcpp code where this happens and
propose the fix, I am sitting on a chair with my laptop on my legs,
not quite convenient for programming :D.
Best,
Alessandro
On Sun, Nov 1, 2015 at 7:35 PM, Alessandro Mammana
wrote:
> As Sean O'Riordain correctly pointed out,
s utils datasets methods base
>
> other attached packages:
> [1] Rcpp_0.12.1
>
> On Sun, Nov 1, 2015 at 3:37 PM, Florian Plaza Oñate
> wrote:
>> The bug is probably fixed by this commit:
>> https://github.com/RcppCore/Rcpp/commit/eb069bf5c20aaa4d38e0ca2897bf04e956
ub.com/RcppCore/Rcpp/commit/eb069bf5c20aaa4d38e0ca2897bf04e956cb8c4c
>
>
> Le 31/10/2015 20:08, Alessandro Mammana a écrit :
>>
>> Dear All,
>> When creating a large matrix with the follwing code:
>>
>> #include
>> // [[Rcpp::export]]
>> Rcpp::In
nt between R and Rcpp in the allocation
of a matrix?
2. In a 64 bits machine, what is actually the maximum allowed length
of a vector/matrix? does the length of a vector/matrix need to be
represented by an int?
Thanks a lot and best regards,
Alessandro
--
Alessandro Mammana, PhD Student
Max Plan
to
make sure that nothing is copied (as these vectors can be very long).
2. Even cleaner would be to start a method in this way:
// [[Rcpp::export]]
Rcpp::List asList(CountSignals x){
do you know if/how I can achieve that? (All of this code is inside an
R package).
Thanks a lot!
--
ng iterators and now the speedup from
> parallel is about 5x (more in line with expectations).
> -- next part ------
> An HTML attachment was scrubbed...
> URL:
> <http://lists.r-forge.r-project.org/pipermail/rcpp-devel/attachments/20140714/39077e47/attachment-000
Makevars :D
On Tue, May 20, 2014 at 5:41 PM, Dirk Eddelbuettel wrote:
>
> On 20 May 2014 at 17:26, Alessandro Mammana wrote:
> | Dear All,
> | first of all thanks again for Rcpp, I am becoming more and more
> | dependent on it and I am filling my directories with .cpp scripts...
&
description file
however during compilation I got an error like:
undefined symbol: _Z16rcpp_hello_worldv
do you know what could be wrong?
Thanks a lot and sorry for bothering.
Ale
--
Alessandro Mammana, PhD Student
Max Planck Institute for Molecular Genetics
Ihnestraße 63-73
D-14195 Berlin,
n the future the special value
R_NilValue could be converted to an empty vector, it would make things
very easy and coherent with R's behaviour.
Thx in advance,
Ale
--
Alessandro Mammana, PhD Student
Max Planck Institute for Molecular Genetics
Ihnes
when deploying packages...
On Fri, Feb 14, 2014 at 1:31 PM, Dirk Eddelbuettel wrote:
>
> On 14 February 2014 at 11:02, Alessandro Mammana wrote:
> | Thanks a lot, I misunderstood the document
> | http://cran.r-project.org/web/packages/Rcpp/vignettes/Rcpp-extending.pdf
> | .
> | But th
/include in the Makevars and a
header classdef.h in
that directory, but this does not seem to add the desired line.
One again I am lost...
What should I do?
On Thu, Feb 13, 2014 at 4:13 PM, Dirk Eddelbuettel wrote:
>
> On 13 February 2014 at 15:55, Alessandro Mammana wrote:
> | Suppose th
r defining my
classes, so how should I do?
Thanks in advance!
Ale
--
Alessandro Mammana, PhD Student
Max Planck Institute for Molecular Genetics
Ihnestraße 63-73
D-14195 Berlin, Germany
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I like the "Strict mode" idea, I will use it, thanks!
On Wed, Feb 12, 2014 at 2:34 PM, Romain Francois
wrote:
>
> Le 12 févr. 2014 à 13:36, Alessandro Mammana a écrit :
>
>> Ah wait, my bad (as always T.T), I found a much simpler explanation:
>>
>> colset &
e you try to cast to
is not the one you expect?
You might imagine that with large datasets this is important.
Sorry for bothering and thanks again,
Ale
On Wed, Feb 12, 2014 at 1:10 PM, Dirk Eddelbuettel wrote:
>
> On 12 February 2014 at 11:47, Alessandro Mammana wrote:
> | Ok I was able
t?
Thanks a lot for your help
Ale
On Tue, Feb 11, 2014 at 3:44 PM, Dirk Eddelbuettel wrote:
>
> In essence: "Yes"
>
> On 11 February 2014 at 15:18, Alessandro Mammana wrote:
> | Hi all,
> | I got another segfault using Rcpp. It is very difficult to understand
> |
ry in the R area of memory with "IntegerVector res(pos.length())"
and R decides to move the original values of "vec" to some other
place, making the pointer invalid.
Is that possible
Sorry for being very vague and thx in advance!!!
Ale
--
Alessandro Mammana, PhD Student
Max
out of scope it tries to free the memory allocated for the list,
and the list tries to free the memory allocated for v1 and v2.
But because ucs is not a normal stl container, I guess I need some
other rules of thumb to understand how I should manage memory.
Thanks a lot in advance, and, don't
hpad.cpp is only 250 lines long...
Do you know what could be wrong?
Thanks in advance!
Ale
--
Alessandro Mammana, PhD Student
Max Planck Institute for Molecular Genetics
Ihnestraße 63-73
D-14195 Berlin, Germany
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Rcpp-de
n:
>
> IntegerVector = as( wrap(a) ) ;
>
> Romain
>
> Le 3 janv. 2014 à 17:18, Alessandro Mammana a écrit :
>
>> Dear all,
>> thank you again for this fantastic library.
>> Sorry for the very stupid question, I looked before posting, but I
>> couldn't
rn-type]
make: *** [scratchpad.o] Error 1
g++ -I/package/mariux64/R/R-3.0.2/lib/R/include -DNDEBUG
-I/usr/local/include
-I"/package/mariux64/R/R-3.0.2/lib/R/library/Rcpp/include"-fpic
-g -O3 -Wall -pedantic -c scratchpad.cpp -o scratchpad.o
Error in sourceCpp("scratchpad.cpp") :
);
so that I am sure that the vector is not copied, the compiler
complains saying that
as(gr.slot("seqnames")) is an rvalue, and if I want to
reference it, the reference should be constant. How do I create a
non-constant reference to a slot of a s4 object then?
If you made it through th
table for passing objects in
and out.
Is that right?
Thanks again,
Ale
On Wed, Nov 20, 2013 at 7:25 PM, Dirk Eddelbuettel wrote:
>
> On 20 November 2013 at 18:54, Alessandro Mammana wrote:
> | Thanks a lot for your help, I'll look at the references. I saw Section
> | 6.1.2 a
emory errors, but this way they are handled by R?
Thanks a lot!
Ale
On Wed, Nov 20, 2013 at 6:35 PM, Dirk Eddelbuettel wrote:
>
> On 20 November 2013 at 18:27, Alessandro Mammana wrote:
> | Dear all,
> | I'm trying to write some efficient code for analyzing sequencing data
> |
and much about memory allocation in Rcpp
and I couldn't find many resources talking about it. Is there anything
R- or Rcpp-specific that I have to keep in mind or should I program as
if I were programming in C/C++?
Thanks a lot!
--
Alessandro Mammana, PhD Stud
Dear Rcpp developers,
I am optimizing some R code by replacing some loops with Rcpp code.
After some profiling, it looks like the cpp function below is still
the limiting step. Does anybody see some possible source of
inefficiency or something easy to improve? Or is it already as fast as
it can ge
at).
>
> If instead you select a column mat( _, 0) you have a conversion to a
> NumericVector.
> I've encountered the same issue a couple of time.
>
> Matteo
>
>
> On Mon, Oct 14, 2013 at 8:21 PM, Alessandro Mammana
> wrote:
>>
>> Hi all,
>> I hav
Hi all,
I have very little experience with Rcpp and also with c++, so I am
sorry if my question might be too stupid.
I am trying to use iterators in my code, because I understand them
better than vectors, because they should be efficient, and because I
should be able to combine different implementa
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