Found the solution:
suppl = Chem.SDMolSupplier(infile, removeHs=False)
JW
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JW Feng, Ph.D.
Denali Therapeutics Inc.
201 Gateway Blvd. South San Francisco, CA 94080 | (650) 270-0628
On Thu, Oct 8, 2015 at 10:30 PM, JW Feng wrote:
> Hi,
>
> I am using "suppl = Chem.SDMolSup
Hi,
I am using "suppl = Chem.SDMolSupplier(infile)" to read a SD file
containing molecules with 3D coordinates for explicit hydrogen atoms. Upon
retrieving a mol from suppl, the explicit hydrogen atoms are suppressed and
3D coordinates were lost. Is there a way to keep explicit hydrogen atoms
and
