Re: [Rdkit-devel] drawing amino acids

2017-09-08 Thread Igor Filippov
Great - thanks, I'll try it! Igor On Fri, Sep 8, 2017 at 8:27 AM, Greg Landrum wrote: > > On Fri, Sep 8, 2017 at 2:10 PM, Igor Filippov > wrote: > >> >>> >>> Could it be that you didn't generate coordinates for the molecule? >>> >>> The result is the same for me whether I load the molecule fro

Re: [Rdkit-devel] drawing amino acids

2017-09-08 Thread Greg Landrum
On Fri, Sep 8, 2017 at 2:10 PM, Igor Filippov wrote: > >> >> Could it be that you didn't generate coordinates for the molecule? >> >> The result is the same for me whether I load the molecule from an SD file > with coordinates, or generate 2D or 3D coordinates on the fly. > Does it display correc

Re: [Rdkit-devel] drawing amino acids

2017-09-08 Thread Igor Filippov
Greg, Thank you for the quick reply. > Could it be that you didn't generate coordinates for the molecule? > > The result is the same for me whether I load the molecule from an SD file with coordinates, or generate 2D or 3D coordinates on the fly. Does it display correctly for you? > BTW: rdMol

Re: [Rdkit-devel] drawing amino acids

2017-09-08 Thread Greg Landrum
Hi Igor, Could it be that you didn't generate coordinates for the molecule? BTW: rdMolDraw2D.PrepareMolForDrawing() is a useful function to know about. -greg On Thu, Sep 7, 2017 at 2:16 PM, Igor Filippov wrote: > Dear Colleagues, > > I seem to remember there already was a discussion about th