[Rdkit-devel] SVG font size problem

2015-05-16 Thread Cyrus Harmon
So (now that I've gotten the basics working on MacOS) I have a little python program that generates an image from a SMILES string: #!/usr/bin/env python import argparse, sys from rdkit import Chem from rdkit.Chem import AllChem from rdkit.Chem import Draw from rdkit.Chem.Draw.MolDrawing import

Re: [Rdkit-devel] seg faults running tests on a mac

2015-05-16 Thread Cyrus Harmon
Following up on my own message... I noticed that the python executable and python libraries found by cmake don't match. cmake finds the homebrew installed python binary, but the system installed libraries. If I remove the homebrew python I can at least get the tests to pass (but run into

Re: [Rdkit-devel] seg faults running tests on a mac

2015-05-16 Thread Greg Landrum
Hi Cyrus, I'm glad you were able to find something that works. If I had to guess, I would say that the root cause of all of this was the homebrew version of python confusing things. -greg On Sat, May 16, 2015 at 7:27 PM, Cyrus Harmon cyrushar...@gmail.com wrote: Ok, I think I've solved (or at

[Rdkit-devel] seg faults running tests on a mac

2015-05-16 Thread Cyrus Harmon
Hi Greg, Sorry it's been a while since I first reported my troubles on a Mac. I continue to have problems on my MacBook Pro, but things seem to work fine on linux for me. The problem is that many of the tests fail with a segfault and there doesn't seem to much information in any of the log files