Re: [Rdkit-devel] polymers

2014-12-30 Thread Igor Filippov
Thank you, Greg! Perhaps I should have posted this on rdkit-discuss, there seems to be more traffic there usually and the topic would get more notice. Igor On Tue, Dec 30, 2014 at 12:55 PM, Greg Landrum wrote: > > > On Mon, Dec 29, 2014 at 12:42 PM, Igor Filippov > wrote: > >> Greg, >> >> Than

Re: [Rdkit-devel] polymers

2014-12-30 Thread Greg Landrum
On Mon, Dec 29, 2014 at 12:42 PM, Igor Filippov wrote: > Greg, > > Thanks for the fast reply, as always! > > > I could imagine a couple solutions to this: > > 1) adding additional arguments to the mol file parser that allows > calling code to specify that they are willing to accept polymers and t

Re: [Rdkit-devel] polymers

2014-12-29 Thread Igor Filippov
Greg, Thanks for the fast reply, as always! > I could imagine a couple solutions to this: > 1) adding additional arguments to the mol file parser that allows calling code to specify that they are willing to accept polymers and then using some new data structure to return info about the polymer. >

Re: [Rdkit-devel] polymers

2014-12-28 Thread Greg Landrum
Hi Igor, On Mon, Dec 29, 2014 at 3:43 AM, Igor Filippov wrote: > I was wondering how complicated it would be to add > the ability to read polymers from molfiles. Right now I am getting > something like this: > Unhandled CTAB feature: S group SRU on line: 75. Molecule skipped > The RDKit doesn't

[Rdkit-devel] polymers

2014-12-28 Thread Igor Filippov
I was wondering how complicated it would be to add the ability to read polymers from molfiles. Right now I am getting something like this: Unhandled CTAB feature: S group SRU on line: 75. Molecule skipped What I would prefer: 1) The molecule is read in and some kind of flag is set to signify that