Re: [Rdkit-devel] Beta of Q3 2013 release available
On Fri, Oct 25, 2013 at 9:20 AM, Gianluca Sforna wrote: > On Thu, Oct 24, 2013 at 1:26 PM, Greg Landrum > wrote: > > > > > > Is the source actually present in > > /builddir/build/BUILD/Release_2013_09_1beta1/Code? > > Got it. The beta tar.gz extracts code into > rdkit-Release_2013_09_1beta1 so I need to update the RDBASE export > before the cartridge compilation > > Doh! Yes, of course that's it. That .tar.gz is automatically generated by github and I don't think it's possible to change the root dir. -greg thanks > > G. > > > -- > Gianluca Sforna > > http://morefedora.blogspot.com > http://identi.ca/giallu - http://twitter.com/giallu > -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register > http://pubads.g.doubleclick.net/gampad/clk?id=60135991&iu=/4140/ostg.clktrk___ Rdkit-devel mailing list Rdkit-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-devel
Re: [Rdkit-devel] Beta of Q3 2013 release available
On Thu, Oct 24, 2013 at 1:26 PM, Greg Landrum wrote: > > > Is the source actually present in > /builddir/build/BUILD/Release_2013_09_1beta1/Code? Got it. The beta tar.gz extracts code into rdkit-Release_2013_09_1beta1 so I need to update the RDBASE export before the cartridge compilation thanks G. -- Gianluca Sforna http://morefedora.blogspot.com http://identi.ca/giallu - http://twitter.com/giallu -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register > http://pubads.g.doubleclick.net/gampad/clk?id=60135991&iu=/4140/ostg.clktrk ___ Rdkit-devel mailing list Rdkit-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-devel
Re: [Rdkit-devel] Beta of Q3 2013 release available
On Thu, Oct 24, 2013 at 11:35 AM, Gianluca Sforna wrote: > > Tried to rebuild the RPMs for Fedora 20, fails at the cartridge with: > > g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions > -fstack-protector-strong --param=ssp-buffer-size=4 > -grecord-gcc-switches -m64 -mtune=generic -Wno-unused-function > -I/usr/local/include > -I/builddir/build/BUILD/Release_2013_09_1beta1/Code > -DRDKITVER='"007100"' -I/usr/local/include > -I/builddir/build/BUILD/Release_2013_09_1beta1/Code > -DRDKITVER='"007100"' -I. -I. -I/usr/include/pgsql/server > -I/usr/include/pgsql/internal -D_GNU_SOURCE -I/usr/include/libxml2 > -fPIC -c -o adapter.o adapter.cpp > adapter.cpp:32:32: fatal error: GraphMol/RDKitBase.h: No such file or > directory > #include > ^ > compilation terminated. > Is the source actually present in /builddir/build/BUILD/Release_2013_09_1beta1/Code? The makefile uses (the equivalent of) -I$RDBASE/Code and assumes that GraphMol is under that. -greg -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register > http://pubads.g.doubleclick.net/gampad/clk?id=60135991&iu=/4140/ostg.clktrk___ Rdkit-devel mailing list Rdkit-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-devel
Re: [Rdkit-devel] Beta of Q3 2013 release available
On Thu, Oct 24, 2013 at 5:28 AM, Greg Landrum wrote: > Here's the github download link: > https://github.com/rdkit/rdkit/archive/Release_2013_09_1beta1.tar.gz > Tried to rebuild the RPMs for Fedora 20, fails at the cartridge with: g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -Wno-unused-function -I/usr/local/include -I/builddir/build/BUILD/Release_2013_09_1beta1/Code -DRDKITVER='"007100"' -I/usr/local/include -I/builddir/build/BUILD/Release_2013_09_1beta1/Code -DRDKITVER='"007100"' -I. -I. -I/usr/include/pgsql/server -I/usr/include/pgsql/internal -D_GNU_SOURCE -I/usr/include/libxml2 -fPIC -c -o adapter.o adapter.cpp adapter.cpp:32:32: fatal error: GraphMol/RDKitBase.h: No such file or directory #include ^ compilation terminated. Did I mess up something? -- Gianluca Sforna http://morefedora.blogspot.com http://identi.ca/giallu - http://twitter.com/giallu -- October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register > http://pubads.g.doubleclick.net/gampad/clk?id=60135991&iu=/4140/ostg.clktrk ___ Rdkit-devel mailing list Rdkit-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-devel
