Re: [Rdkit-discuss] how to install rdkit systemwide on Ubuntu 12.04

2012-11-08 Thread Riccardo Vianello
Hi Michał, On Thu, Nov 8, 2012 at 6:21 PM, Michał Nowotka wrote: > I would like to install rdkit in such a way, I don't have to append anything > to LD_LIBRARY_PATH. I'm not a Ubuntu user so I don't know/remember the details, but I think RDKit deb distribution packages for Ubuntu are periodicall

Re: [Rdkit-discuss] better error messages (vol 3)

2012-11-08 Thread Gianluca Sforna
On Thu, Nov 8, 2012 at 4:56 PM, JP wrote: > I am, allegedly, a computer scientist, and I should know that counting > starts from 0. > Actually, after being bitten by this more than once, I started to use a convention in my own code so that diagnostic/erorr messages to be read by humans show atom i

Re: [Rdkit-discuss] how to install rdkit systemwide on Ubuntu 12.04

2012-11-08 Thread Christos Kannas
Hi Michal, I don't think it will work, at least with Python since it requires the RDKit directory in PYTHONPATH and RDKit/lib is required in LD_LIBRARY_PATH in order that Python can find the library files created when building RDKit. Regards, Christos Kannas Sent from my Galaxy Note! On Nov 8,

[Rdkit-discuss] how to install rdkit systemwide on Ubuntu 12.04

2012-11-08 Thread Michał Nowotka
Hello, I would like to install rdkit in such a way, I don't have to append anything to LD_LIBRARY_PATH. If I do: export RDBASE=/usr/lib and run cmake & make & make install would that do the trick? Kind regards, Michal Nowotka --

Re: [Rdkit-discuss] better error messages (vol 3)

2012-11-08 Thread JP
Please disregard this "bad hair day" message. I am, allegedly, a computer scientist, and I should know that counting starts from 0. Bleh, Sorry, - Jean-Paul Ebejer Early Stage Researcher On 8 November 2012 15:33, JP wrote: > Hi there RDkitters, > > Poll season: Does anyone else feel the need f

[Rdkit-discuss] better error messages (vol 3)

2012-11-08 Thread JP
Hi there RDkitters, Poll season: Does anyone else feel the need for more informative error messages? For example the below code gives me: [15:25:17] non-ring atom 22 marked aromatic But which is atom 22 ? Any ideas? Is it possible to have the equivalent atom rank/index in the file? I tried th