[Rdkit-discuss] FYI: google code shutting down

2015-03-13 Thread Greg Landrum
Dear all, Google has decided to shut down Google Code: http://google-opensource.blogspot.ch/2015/03/farewell-to-google-code.html This doesn't have a huge impact on the RDKit since the only current information that's still hosted there is the wiki (and a lot of that is pretty out of date).

Re: [Rdkit-discuss] Oracle, pypl and rdkit

2015-03-13 Thread Michal Krompiec
Hi Jan and TJ, Thank you very much for your comments. Yes, I'm going to use fingerprints, but I was hoping to use UTL_RAW bitwise operation to handle them (we'll see how this goes). What worries me that invoking structure matching via PYPL for each molecule would be slow, do you see any way of

Re: [Rdkit-discuss] FYI: google code shutting down

2015-03-13 Thread Dimitri Maziuk
On 2015-03-13 01:25, Greg Landrum wrote: Github does offer the option of setting up a wiki for a project, I haven't done this for the RDKit since it doesn't seem that necessary (and it seems that the information in wikis has a tendency to rot) but if anyone has strong opinion otherwise, we

Re: [Rdkit-discuss] FYI: google code shutting down

2015-03-13 Thread Maciek Wójcikowski
I vote for setting up readthedocs.org automatic documentation generation, plus some sphinx API docs. All we need to do then is to keep track of changes and create solid docstrings. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2015-03-13 15:43 GMT+01:00 David Hall

Re: [Rdkit-discuss] FYI: google code shutting down

2015-03-13 Thread David Hall
well, presumably the documentation not in the wiki would continue to be online. http://rdkit.org/docs/index.html http://rdkit.org/docs/index.html http://rdkit.org/docs/api/index.html http://rdkit.org/docs/api/index.html http://rdkit.org/docs/cppapi/index.html

Re: [Rdkit-discuss] FYI: google code shutting down

2015-03-13 Thread Greg Landrum
You mean like the docs that are already there? The links that David provided are to docs that are built on Sphinx. Those are also available, without the API documentation from ReadTheDocs ( https://readthedocs.org/projects/rdkit/) My solution for keeping the docs as up-to-date as possible is to

Re: [Rdkit-discuss] FYI: google code shutting down

2015-03-13 Thread Maciek Wójcikowski
My bad. I knew it's Sphinx generated, although had no idea it's in sync with Github :) There is also no mention of it on github (a badge would be nice) - Pull Request coming. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2015-03-13 16:10 GMT+01:00 Greg Landrum