Re: [Rdkit-discuss] RDKit Release 2018.09.2 available

2019-02-21 Thread Markus Sitzmann
Hi Greg, I just saw it is available in the conda-forge channel (with a time stamp of 2 hours + a few minutes), however, if I install it from there (in a fresh container) I receive 2018_09_1 - only when I explicitly force version 2018_09_2 I receive it (and at a very fast glance it is running). Bu

[Rdkit-discuss] RDKit Release 2018.09.2 available

2019-02-21 Thread Greg Landrum
Dear all, I normally don't announce the patch releases, but there are a couple of changes with the conda builds, so I figured I should probably mention it. :-) This time I did builds for: Python 3.7: Mac, Linux, Windows Python 3.6: Mac, Linux, Windows Python 2.7: Mac, Linux The boost and numpy d

[Rdkit-discuss] Save the Date for the RDKit UGM: 25-27 September

2019-02-21 Thread Greg Landrum
Dear all, This year's RDKit UGM will take place from 25-27 September in at the University of Hamburg in Hamburg, Germany. Emanuel Ehmki will be the organizer/host this time around. We'll put together the usual announcement and registration page over the next couple of weeks, but definitely go ahe

[Rdkit-discuss] idea for a general discussion thread

2019-02-21 Thread Mario Lovrić
Dear all, Being that I (and I guess others) often have general cheminformats questions I want to propose to add a general discussion thread, e.g "RDKit general" There is a cheminformatics tag on the chemistry.stackexchange but I find the RDKit community much more open-minded, highly specialized an

Re: [Rdkit-discuss] warnings when exporting pandas tables with molecules to hdf

2019-02-21 Thread Jose Manuel Gally
Hi Greg, thanks for your input, this is quite faster! Cheers, Jose Manuel On 21.02.19 09:48, Greg Landrum wrote: This is a nice solution to the problem. Thanks for sharing it! I think there is, however a minor mistake. This line: df['mol'] = df['mol'].map(lambda x: base64.b64encode(pickle.d

Re: [Rdkit-discuss] warnings when exporting pandas tables with molecules to hdf

2019-02-21 Thread Greg Landrum
This is a nice solution to the problem. Thanks for sharing it! I think there is, however a minor mistake. This line: df['mol'] = df['mol'].map(lambda x: base64.b64encode(pickle.dumps(x)).decode()) should be: df['mol'] = df['mol'].map(lambda x: base64.b64encode(x.ToBinary()).decode()) You could