Re: [Rdkit-discuss] CIPLabeler ranks

2022-12-19 Thread Greg Landrum
Hi Juuso, Based on what you've described, I think you can use the canonical atom ranks generated without tie breaking: In [8]: m = Chem.MolFromSmiles('C[C@H]1OC[C@H](F)CC1(C)C') In [9]: list(Chem.CanonicalRankAtoms(m,breakTies=False)) Out[9]: [0, 8, 6, 4, 7, 3, 5, 9, 1, 1] This uses the same

Re: [Rdkit-discuss] CIPLabeler ranks

2022-12-19 Thread Juuso Lehtivarjo
Hi Greg, Thanks for your answer. After my post I got myself the Hanson et al. paper, and now understand better how the new algorithm works, and why there is no such thing as CIPRanks anymore. I use the CIPRanks for prochirality assignment, and subsequently those assignments in NMR grouping