[Rdkit-discuss] Drawing quality image with PandasTools.FrameToGridImage

2019-03-22 Thread Bakary N'tji Diallo
It is possible to draw high-quality image for a set of compounds. I am trying to use the panda tool using the FrameToGridImage function. rdkit.Chem.PandasTools.FrameToGridImage(frame, column=’ROMol’, legendsCol=None, **kwargs) But using it with the “useSVG=True” keyword is throwing an error.

Re: [Rdkit-discuss] Structure-Based Drug Design

2019-03-17 Thread Bakary N'tji Diallo
2) For visualization nglview has lot of capabilities. I run simulation on a cluster and with nglview in a Notebook, the final trajectories can be directly be loaded in the notebook for visualization. Here is a gallery of different usages for visualization with

[Rdkit-discuss] Draw mol name

2018-09-16 Thread Bakary N'tji Diallo
Dear all Hope you are doing well How to draw mol object with their name. With MolsToGridImage Draw.MolsToGridImage([ms[0]],molsPerRow=1,subImgSize=(200,200), legends=["test"]) The legend parameter is assigned as molecule name and is drawn. But I'd like to use Draw.MolToFile. Draw.MolToFile(ms[0],