Re: [Rdkit-discuss] How to calculate Tanimoto similarity score between reactions

2020-06-11 Thread Greg Landrum
Hi Shaozhen, The function for creating reaction fingerprints is rdChemReactions.CreateDifferenceFingerprintForReaction() Here's a quick demo of using it on your reactions: In [44]: rxn1 = rdChemReactions.ReactionFromSmarts('CCCO>>CCC=O') In [45]: rxn2 =

Re: [Rdkit-discuss] How to calculate Tanimoto similarity score between reactions

2020-06-10 Thread Francois Berenger
On 10/06/2020 13:11, 丁邵珍 wrote: Hi, I want to calculate Tanimoto similarity score of two reactions ('CCCO>>CCC=O', 'CC(O)C>>CC(=O)C'), I found all methods of Tanimoto similarity score calculation are for compounds. Could you please tell me how to calculate the Tanimoto similarity score of

[Rdkit-discuss] How to calculate Tanimoto similarity score between reactions

2020-06-09 Thread ??????
Hi, I want to calculate Tanimoto similarity score of two reactions ('CCCOCCC=O', 'CC(O)CCC(=O)C'), I found all methods of Tanimoto similarity score calculation are for compounds. Could you please tell me how to calculate the Tanimoto similarity score of reactions? I am looking forward to your