Re: [Rdkit-discuss] Pharmacophore Fingerprints

2020-02-21 Thread Paolo Tosco
Hi Antoine, |rdkit.Chem.Pharm2D.Generate.||Gen2DFingerprint()| expects a single molecule https://www.rdkit.org/docs/source/rdkit.Chem.Pharm2D.Generate.html?highlight=gen2dfingerprint#rdkit.Chem.Pharm2D.Generate.Gen2DFingerprint while you are passing a list of molecules: pharmacophorefps = Gene

[Rdkit-discuss] Pharmacophore Fingerprints

2020-02-21 Thread Antoine Dumas
Hello, I am trying to generate a set of pharmacophore fingerprints in python using RDKIT from a list of SMILES (20k molecules) No matter what I do the script keeps throwing an error saying my code doesn't match the C++ signature. Here is a copy of my code as it stands right now from __future__