Re: [Rdkit-discuss] Problems building RDKit + JavaWrappers

2020-04-28 Thread Tim Dudgeon
It's availalbe from the org.RDKit.RDKFuncs class. e.g: String RDKFuncs.standardizeSmiles(String smiles)​ RWMol cleanup​(RWMol mol) TIm On 28/04/2020 15:09, Thomas Eckert wrote: That helped, thanks! Didn't realize 'make install' was needed after building the wrappers - I had built without the

Re: [Rdkit-discuss] Problems building RDKit + JavaWrappers

2020-04-28 Thread Thomas Eckert
That helped, thanks! Didn't realize 'make install' was needed after building the wrappers - I had built without the wrappers first, trying to detect problems iteratively. So now I'm able to use the wrappers in Java but noticed not all "core functionality" is covered by the wrappers. Specifically,

Re: [Rdkit-discuss] Problems building RDKit + JavaWrappers

2020-04-22 Thread Tim Dudgeon
Have a look in 'Code/JavaWrappers/gmwrapper/' not 'build/Code/JavaWrappers/gmwrapper/' ? Tim On 22/04/2020 10:36, Thomas Eckert wrote: Hi folks, Trying to build RDKit + JavaWrappers from scratch but, in the end, the JAR files are missing. Working on a freshly installed Ubuntu 19.10 and

[Rdkit-discuss] Problems building RDKit + JavaWrappers

2020-04-22 Thread Thomas Eckert
Hi folks, Trying to build RDKit + JavaWrappers from scratch but, in the end, the JAR files are missing. Working on a freshly installed Ubuntu 19.10 and followed the steps described at [1]. All dependencies installed via Ubuntu's apt, no manually installed libs. Cloned the RDKit sources to