Re: [Rdkit-discuss] Problems with coordMap in EmbedMultipleConfs

2017-11-28 Thread Paolo Tosco
Dear Jan, I don't think you are doing anything wrong. I tried using coordMap myself a few weeks ago and it looked like the parameter was being ignored. I'll try and understand why that happens as soon as I have a bit of time. Kind regards, Paolo On 11/28/17 10:16, Jan Halborg Jensen wrote:

[Rdkit-discuss] Problems with coordMap in EmbedMultipleConfs

2017-11-28 Thread Jan Halborg Jensen
The following code should produce 5 conformers of c1c1CCC” where the coordinates of the benzene ring is the same. But it doesn’t. What I am doing wrong? Best regards, Jan from rdkit import Chem from rdkit.Chem import AllChem template_smiles = "c1c1" template = Chem.MolFromSmiles